PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G07490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 317aa    MW: 33534.4 Da    PI: 4.6858
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G07490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.92.8e-7139314109374
             GRAS 109 eerv.HiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrledleleeL 194
                      ++rv Hi+D+d+ +G+QWp+Llqa+a+R+    ++pp++R+Tg g     +++ l +tg+rL+ f ++l++pf+f++l    + +l++  + +L
  ORUFI02G07490.1  39 HRRVlHIVDLDAAHGVQWPPLLQAIADRAdpavGPPPEVRLTGAGT----DRDVLLRTGDRLRAFSSSLNLPFRFHPLilpCTAELAADPTAAL 128
                      44444************************88888899*********....****************************554445666668899* PP

             GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........sFlerflealeyysalfdsleaklprese 280
                      +++p+E+laVn+vl lh+l   +++l+     +L+ vks++P vv+++e+e  +++         ++ +r++ a++yys++fd+lea++p++s 
  ORUFI02G07490.1 129 ELHPDETLAVNCVLFLHKLG-GDGELAA----FLRWVKSMNPAVVTIAEREGVLGGDvdddnvpdELPRRVAAAMDYYSSVFDALEATVPPASA 217
                      *******************8.5666666....*******************888655577788999**************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvS 371
                      +r  vE+e+l+rei  +va+ ga    r + +  W ++ ++aG+ p pls +aa+qa+lllr ++ s+gy+ +++  +g+ +l W++rpL+svS
  ORUFI02G07490.1 218 DRLAVEQEILSREIDAAVAAPGAGGGGRARDFDAWASAARAAGLAPRPLSAFAASQARLLLRLHYpSEGYKADDDggRGACFLRWQQRPLMSVS 311
                      *************************************************************************996667788************ PP

             GRAS 372 aWr 374
                      +W+
  ORUFI02G07490.1 312 SWQ 314
                      **6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.8181291IPR005202Transcription factor GRAS
PfamPF035149.7E-6939314IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MLGSSPARDR GGGDDAEASE QPQPQPQPXA AAADAGGAHR RVLHIVDLDA AHGVQWPPLL  60
QAIADRADPA VGPPPEVRLT GAGTDRDVLL RTGDRLRAFS SSLNLPFRFH PLILPCTAEL  120
AADPTAALEL HPDETLAVNC VLFLHKLGGD GELAAFLRWV KSMNPAVVTI AEREGVLGGD  180
VDDDNVPDEL PRRVAAAMDY YSSVFDALEA TVPPASADRL AVEQEILSRE IDAAVAAPGA  240
GGGGRARDFD AWASAARAAG LAPRPLSAFA ASQARLLLRL HYPSEGYKAD DDGGRGACFL  300
RWQQRPLMSV SSWQPQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-3331314100375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041910.0AP004191.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1524_D08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624347.10.0PREDICTED: protein MONOCULM 1-like, partial
SwissprotQ84MM91e-109MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A0E0NB750.0A0A0E0NB75_ORYRU; Uncharacterized protein
STRINGLOC_Os02g10360.10.0(Oryza sativa Japonica Group)
STRINGORGLA02G0069300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-53GRAS family protein